STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0891Signal transduction histidine kinase. (358 aa)    
Predicted Functional Partners:
BDP_0892
Response regulator of two-component system.
 
 0.986
BDP_0775
Two-component response regulator.
 
 0.909
vicR
Response regulator protein VicR.
 
 0.891
BDP_1973
Response regulator-like transcriptional regulatory protein.
 
 
 0.767
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
  
 0.662
BDP_0500
Histidine kinase sensor of two component system.
  
 
 0.582
BDP_0174
ABC-type sugar transporter, sugar-binding component.
    
 
 0.564
BDP_1483
ABC-type sugar transport system, periplasmic component.
    
 
 0.564
rbsB1
D-ribose-binding protein RbsB.
    
 
 0.564
BDP_0894
CarD family transcriptional regulator.
     
 0.497
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.