STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0897ATP binding protein of ABC transporter. (295 aa)    
Predicted Functional Partners:
BDP_0896
ABC transporter permease.
 
 
 0.999
BDP_1878
Solute binding protein of ABC transporter system, YodA-like protein.
 
  
 0.993
BDP_0898
ABC transporter solute-binding protein.
 
  
 0.957
BDP_0392
Solute binding protein of ABC transporter system.
 
  
 0.898
BDP_1334
ATP-binding protein of ABC transporter system.
  
   
 0.661
BDP_0716
Ferric uptake regulation protein; Belongs to the Fur family.
  
  
 0.596
BDP_2083
ATP-binding protein of ABC transporter system.
 
  
 0.561
folD
Bifunctional methylenetetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclohydrolase; Catalyzes the oxidation of 5,10-methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10- methenyltetrahydrofolate to 10-formyltetrahydrofolate.
       0.560
rpsA
30S ribosomal protein S1.
       0.470
coaE
Dephospho-CoA kinase; Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A; Belongs to the CoaE family.
       0.460
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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