STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0952Extracellular solute-binding protein. (432 aa)    
Predicted Functional Partners:
BDP_0951
ABC transporter sugar permease.
 
   0.968
BDP_0950
Beta-glucosidase.
 
 
 0.962
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
  
 0.903
BDP_1268
Sugar-binding protein of ABC transporter system.
  
  
  0.810
bgl
Beta-glucosidase; Belongs to the glycosyl hydrolase 1 family.
  
    0.778
malC
MalC Maltodextrin transport system permease protein.
 
 0.729
BDP_1269
Sugar-binding protein of ABC transporter system.
 
   0.692
BDP_0129
LacI-type transcriptional regulator.
 
   
 0.685
BDP_1270
Glucose transport system permease protein (ABC type).
 
 
 0.667
BDP_2183
Sugar ABC transporter, permease protein.
 
 
 0.659
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.