STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0990Two-component system response regulator. (258 aa)    
Predicted Functional Partners:
polA-2
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.822
BDP_0879
Histidine kinase-like protein.
 
   
 0.796
BDP_0992
Conserved hypothetical protein.
       0.770
BDP_0993
Phosphohydrolase (MutT/nudix family protein); Belongs to the Nudix hydrolase family.
       0.770
glgX
Glycogen operon protein GlgX; Belongs to the glycosyl hydrolase 13 family.
       0.637
rpsA
30S ribosomal protein S1.
  
    0.554
BDP_0100
Branched-chain amino acid transport system substrate-binding protein.
  
 
 0.547
BDP_0101
Branched-chain amino acid transporter system substrate-binding protein.
  
 
 0.547
BDP_0605
Leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein.
  
 
 0.547
BDP_1078
Glutamate synthase [NADPH] large subunit.
  
  
 0.457
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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