STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0992Conserved hypothetical protein. (301 aa)    
Predicted Functional Partners:
BDP_0993
Phosphohydrolase (MutT/nudix family protein); Belongs to the Nudix hydrolase family.
       0.856
polA-2
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.811
BDP_0990
Two-component system response regulator.
       0.805
glgX
Glycogen operon protein GlgX; Belongs to the glycosyl hydrolase 13 family.
       0.706
BDP_0106
Urea amidolyase related protein.
  
  
 0.556
dgt
Dgt Deoxyguanosinetriphosphate triphosphohydrolase.
 
     0.532
BDP_0028
Conserved hypothetical protein.
  
     0.469
rmlB
dTDP-glucose 4,6-dehydratase; Belongs to the NAD(P)-dependent epimerase/dehydratase family. dTDP-glucose dehydratase subfamily.
  
    0.461
BDP_0372
Putative multiple substrate aminotransferase.
  
    0.457
BDP_0906
NTP pyrophosphohydrolase.
  
   0.446
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.