STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_0993Phosphohydrolase (MutT/nudix family protein); Belongs to the Nudix hydrolase family. (208 aa)    
Predicted Functional Partners:
BDP_0906
NTP pyrophosphohydrolase.
 
  
 0.945
pgm
Pgm Phosphoglucomutase.
     
  0.900
prsA-2
prsA Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily.
     
  0.900
prsA-3
Ribose-phosphate pyrophosphokinase.
     
  0.900
BDP_0992
Conserved hypothetical protein.
       0.856
BDP_0990
Two-component system response regulator.
       0.805
polA-2
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
       0.805
glgX
Glycogen operon protein GlgX; Belongs to the glycosyl hydrolase 13 family.
       0.706
pepC2
pepC2 Aminopeptidase C; Belongs to the peptidase C1 family.
    
   0.422
BDP_1343
Aminopeptidase C; Belongs to the peptidase C1 family.
    
   0.422
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.