Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1013Conserved hypothetical protein. (132 aa)    
Predicted Functional Partners:
BDP_1014
Conserved hypothetical protein.
 
    0.959
BDP_1015
ABC transporter ATP-binding protein.
 
    0.919
BDP_0165
Hypothetical membrane-spanning protein.
 
     0.771
BDP_0164
Hypothetical secreted protein.
 
     0.763
BDP_0166
ABC-type transporter, permease component.
 
    0.754
BDP_0163
High-affinity Fe2+/Pb2+ permease.
 
     0.726
BDP_0167
ABC-type transporter, permease component.
 
    0.714
BDP_2066
Conserved hypothetical membrane spanning protein.
  
     0.635
vexP3
ATP-binding protein of ABC transporter system VexP3.
 
    0.585
BDP_0168
ABC-type transporter, ATP-binding component.
 
    0.576
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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