STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1015ABC transporter ATP-binding protein. (269 aa)    
Predicted Functional Partners:
BDP_1014
Conserved hypothetical protein.
 
 
 0.971
BDP_1013
Conserved hypothetical protein.
 
    0.934
BDP_0167
ABC-type transporter, permease component.
 
 
 0.839
BDP_0711
Permease protein of ABC transporter system.
 
 0.820
BDP_0817
Permease protein of ABC transporter system.
 
 
 0.792
BDP_0166
ABC-type transporter, permease component.
 
 
 0.785
BDP_2083
ATP-binding protein of ABC transporter system.
  
     0.757
BDP_1334
ATP-binding protein of ABC transporter system.
  
    0.729
BDP_2016
ATP-binding protein of ABC transporter system.
  
     0.651
BDP_1496
Permease protein of ABC transporter system.
 
 
 0.634
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.