STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1058Conserved hypothetical protein. (135 aa)    
Predicted Functional Partners:
BDP_1110
4-carboxymuconolactone decarboxylase.
   
 0.810
BDP_0856
Flavodoxin.
 
    0.752
BDP_0858
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
  
 0.636
BDP_1056
Aldo/keto reductase.
  
    0.582
adh2
Adh2 Aldehyde-alcohol dehydrogenase 2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.573
purB
purB Adenylosuccinate lyase.
  
 
 0.521
BDP_1059
ABC transporter ATP-binding protein.
  
   0.505
BDP_1318
Transcriptional regulator, AraC family.
  
 
 0.504
BDP_0498
Hypothetical protein.
  
    0.465
BDP_1061
Transcriptional regulator, PadR-like family.
  
    0.463
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.