Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1060ABC transporter, permease protein. (996 aa)    
Predicted Functional Partners:
BDP_1059
ABC transporter ATP-binding protein.
 
   0.926
BDP_1061
Transcriptional regulator, PadR-like family.
 
     0.900
crcB1
Camphor resistance CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.616
crcB2
Camphor resistance CrcB protein; Important for reducing fluoride concentration in the cell, thus reducing its toxicity; Belongs to the CrcB (TC 9.B.71) family.
       0.616
BDP_0816
ATP-binding protein of ABC transporter system.
 
   0.548
BDP_1495
ATP-binding protein of ABC transporter system.
 
   0.525
BDP_0817
Permease protein of ABC transporter system.
 
    0.470
BDP_0339
ATP-binding protein of ABC transporter system.
 
   0.456
BDP_1058
Conserved hypothetical protein.
       0.445
BDP_0709
ATP-binding protein of ABC transporter system.
 
   0.441
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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