STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1071Alpha/beta hydrolase. (332 aa)    
Predicted Functional Partners:
BDP_0728
Glycosyltransferase.
 
 
 
 0.681
rplY
50S ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
       0.582
BDP_1081
Glycosyltransferase.
   
 
 0.534
BDP_1179
Capsular polysaccharide biosynthesis protein.
   
 
 0.534
epsF
EpsF glycosyl transferase (group 1).
   
 
 0.534
BDP_1845
Glycosyltransferase group 1.
   
 
 0.534
BDP_1846
Glycosyl transferase group 1.
   
 
 0.534
BDP_1847
Capsular polysaccharide biosynthsis protein.
   
 
 0.534
wefN
Glycosyl transferase group 1 WefN.
   
 
 0.534
BDP_1852
Glycosyl transferases group 1,glycosyl transferase group 1.
   
 
 0.534
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.