STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1078Glutamate synthase [NADPH] large subunit. (1507 aa)    
Predicted Functional Partners:
BDP_0008
Glutamate dehydrogenase; Belongs to the Glu/Leu/Phe/Val dehydrogenases family.
  
 0.999
BDP_0062
ferredoxin/ferredoxin-NADP reductase.
 
 
 0.999
BDP_1079
Glutamate synthase [NADPH] small subunit.
 0.999
guaC
guaC GMP reductase,fadD1 Long-chain-fatty-acid--CoA ligase.
  
 
 0.991
glnA1
glnA1 Glutamine synthetase.
  
 
 0.988
glnA2
glnA2 Glutamine synthetase.
  
 
 0.988
carB
carB Carbamoyl-phosphate synthase large chain; Belongs to the CarB family.
  
 
 0.985
BDP_0650
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing).
   
 0.965
gadB
GadB glutamate decarboxylase; Belongs to the group II decarboxylase family.
    
 0.959
purF
purF Amidophosphoribosyltransferase; Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine; In the C-terminal section; belongs to the purine/pyrimidine phosphoribosyltransferase family.
    
 0.951
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.