BDP_1082 protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDP_1082

ATP binding protein of ABC transporter. (298 aa)

Predicted Functional Partners:

BDP_1083

0.746

sixA

0.595

BDP_1334

0.585

BDP_1080

0.552

BDP_1081

0.528

BDP_1078

0.511

arc

0.492

metE

0.413

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_1078	BDP_1080	BDP_1078	BDP_1080	Glutamate synthase [NADPH] large subunit.	Conserved hypothetical protein.	0.645
BDP_1078	BDP_1082	BDP_1078	BDP_1082	Glutamate synthase [NADPH] large subunit.	ATP binding protein of ABC transporter.	0.511
BDP_1078	BDP_1083	BDP_1078	BDP_1083	Glutamate synthase [NADPH] large subunit.	Methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.	0.491
BDP_1078	metE	BDP_1078	BDP_1085	Glutamate synthase [NADPH] large subunit.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.	0.507
BDP_1078	sixA	BDP_1078	BDP_1084	Glutamate synthase [NADPH] large subunit.	Phosphohistidine phosphatase SixA.	0.476
BDP_1080	BDP_1078	BDP_1080	BDP_1078	Conserved hypothetical protein.	Glutamate synthase [NADPH] large subunit.	0.645
BDP_1080	BDP_1081	BDP_1080	BDP_1081	Conserved hypothetical protein.	Glycosyltransferase.	0.491
BDP_1080	BDP_1082	BDP_1080	BDP_1082	Conserved hypothetical protein.	ATP binding protein of ABC transporter.	0.552
BDP_1080	BDP_1083	BDP_1080	BDP_1083	Conserved hypothetical protein.	Methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.	0.485
BDP_1081	BDP_1080	BDP_1081	BDP_1080	Glycosyltransferase.	Conserved hypothetical protein.	0.491
BDP_1081	BDP_1082	BDP_1081	BDP_1082	Glycosyltransferase.	ATP binding protein of ABC transporter.	0.528
BDP_1081	BDP_1083	BDP_1081	BDP_1083	Glycosyltransferase.	Methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.	0.431
BDP_1082	BDP_1078	BDP_1082	BDP_1078	ATP binding protein of ABC transporter.	Glutamate synthase [NADPH] large subunit.	0.511
BDP_1082	BDP_1080	BDP_1082	BDP_1080	ATP binding protein of ABC transporter.	Conserved hypothetical protein.	0.552
BDP_1082	BDP_1081	BDP_1082	BDP_1081	ATP binding protein of ABC transporter.	Glycosyltransferase.	0.528
BDP_1082	BDP_1083	BDP_1082	BDP_1083	ATP binding protein of ABC transporter.	Methyltransferase; Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA.	0.746
BDP_1082	BDP_1334	BDP_1082	BDP_1334	ATP binding protein of ABC transporter.	ATP-binding protein of ABC transporter system.	0.585
BDP_1082	arc	BDP_1082	BDP_0751	ATP binding protein of ABC transporter.	AAA family ATPase.	0.492
BDP_1082	metE	BDP_1082	BDP_1085	ATP binding protein of ABC transporter.	5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation; Belongs to the vitamin-B12 independent methionine synthase family.	0.413
BDP_1082	sixA	BDP_1082	BDP_1084	ATP binding protein of ABC transporter.	Phosphohistidine phosphatase SixA.	0.595