Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
BDP_0144 | BDP_1130 | BDP_0144 | BDP_1130 | Fimbrial subunit. | Conserved hypothetical protein. | 0.714 |
BDP_0144 | BDP_1773 | BDP_0144 | BDP_1773 | Fimbrial subunit. | Fibronectin type III domain-containing protein. | 0.681 |
BDP_0144 | BDP_1778 | BDP_0144 | BDP_1778 | Fimbrial subunit. | Hypothetical protein. | 0.678 |
BDP_0144 | BDP_1779 | BDP_0144 | BDP_1779 | Fimbrial subunit. | FHA domain-containing protein. | 0.735 |
BDP_0983 | BDP_1129 | BDP_0983 | BDP_1129 | TraG-related protein. | Conserved hypothetical protein. | 0.663 |
BDP_0983 | BDP_1130 | BDP_0983 | BDP_1130 | TraG-related protein. | Conserved hypothetical protein. | 0.674 |
BDP_1128 | BDP_1129 | BDP_1128 | BDP_1129 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.990 |
BDP_1128 | BDP_1130 | BDP_1128 | BDP_1130 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.990 |
BDP_1128 | uvrA | BDP_1128 | BDP_1131 | Conserved hypothetical protein. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.705 |
BDP_1128 | uvrC | BDP_1128 | BDP_1132 | Conserved hypothetical protein. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.685 |
BDP_1129 | BDP_0983 | BDP_1129 | BDP_0983 | Conserved hypothetical protein. | TraG-related protein. | 0.663 |
BDP_1129 | BDP_1128 | BDP_1129 | BDP_1128 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.990 |
BDP_1129 | BDP_1130 | BDP_1129 | BDP_1130 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.931 |
BDP_1129 | BDP_2262 | BDP_1129 | BDP_2262 | Conserved hypothetical protein. | Hypothetical secreted protein. | 0.663 |
BDP_1129 | uvrA | BDP_1129 | BDP_1131 | Conserved hypothetical protein. | Excinuclease ABC subunit A; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 UvrA and 2 UvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by UvrB, the UvrA molecules dissociate. | 0.705 |
BDP_1129 | uvrC | BDP_1129 | BDP_1132 | Conserved hypothetical protein. | Excinuclease ABC subunit C; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision. | 0.685 |
BDP_1130 | BDP_0144 | BDP_1130 | BDP_0144 | Conserved hypothetical protein. | Fimbrial subunit. | 0.714 |
BDP_1130 | BDP_0983 | BDP_1130 | BDP_0983 | Conserved hypothetical protein. | TraG-related protein. | 0.674 |
BDP_1130 | BDP_1128 | BDP_1130 | BDP_1128 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.990 |
BDP_1130 | BDP_1129 | BDP_1130 | BDP_1129 | Conserved hypothetical protein. | Conserved hypothetical protein. | 0.931 |
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