STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1167MIP family channel protein; Belongs to the MIP/aquaporin (TC 1.A.8) family. (314 aa)    
Predicted Functional Partners:
der
Bifunctional cytidylate kinase/GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the cytidylate kinase family. Type 1 subfamily.
  
    0.717
BDP_1166
RNA pseudouridylate synthase; Belongs to the pseudouridine synthase RsuA family.
       0.708
BDP_2007
Glycerol uptake facilitator-like protein in Mip family; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
   
 0.659
BDP_0042
Phosphoprotein phosphatase.
  
 
   0.595
BDP_1802
Transcription regulator, crp family.
 
 
 0.591
BDP_1150
Conserved hypothetical protein.
  
  
 0.588
prpC
Protein phosphatase PrpC.
    
   0.530
BDP_1397
Peptidyl-prolyl cis-trans isomerase; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides; Belongs to the cyclophilin-type PPIase family.
   
 
 0.509
BDP_0201
Phosphodiesterase.
  
 
 0.501
BDP_1099
HAD-superfamily hydrolase, subfamily IA, variant 3.
  
   0.499
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.