STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpe1Rpe1 Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. (221 aa)    
Predicted Functional Partners:
tkt
Transketolase; Belongs to the transketolase family.
 
 0.964
gnt-2
Gnt 6-phosphogluconate dehydrogenase; Catalyzes the oxidative decarboxylation of 6-phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH.
   
 0.940
rpi
Rpi Ribose 5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate.
  
 0.938
BDP_0575
Xylulose kinase.
   
 0.922
araD
L-ribulose-5-phosphate 4-epimerase.
  
 
 0.911
gnt
Gnt 6-phosphogluconate dehydrogenase.
    
 0.906
BDP_0013
Sugar decarboxylase or lyase/synthase.
    
 0.905
BDP_0012
Sugar kinase.
  
 0.849
fabG-5
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 0.835
hisE
HisE Phosphoribosyl-ATP pyrophosphatase.
  
    0.761
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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