STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
fadH3fadD3 Long-chain-fatty-acid--CoA ligase. (664 aa)    
Predicted Functional Partners:
fas
Fatty acid synthase Fas.
    
 0.904
BDP_1047
Long-chain-fatty acid CoA ligase.
  
  
 
0.823
BDP_0300
Alpha/beta fold family hydrolase membrane associated protein.
   
 
 0.815
fadD1
fadD1 Long-chain-fatty-acid--CoA ligase.
  
  
 
0.815
BDP_0107
Biotin-dependent acyl-CoA carboxylase.
  
 
 0.811
accC
accC Acetyl-/propionyl-CoA carboxylase alpha chain.
  
 
 0.811
fadD
long-chain-fatty-acid--CoA ligase.
  
  
 
0.808
def
Def Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions.
       0.773
BDP_1205
Conserved hypothetical protein.
       0.535
pyrH
PyrH Uridylate kinase; Catalyzes the reversible phosphorylation of UMP to UDP.
       0.478
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.