STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1217COME operon protein 3. (514 aa)    
Predicted Functional Partners:
BDP_1218
COME operon protein 1.
  
  
 0.763
BDP_1216
DNA polymerase III, delta subunit.
   
 0.751
gpc
Gcp O-sialoglycoprotein endopeptidase; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
    0.697
BDP_1215
ATP-binding protein of ABC transporter system.
       0.695
BDP_0890
Conserved hypothetical protein.
 
  
 0.673
smf
Smf protein.
 
  
 0.655
rimI
rimI Ribosomal-protein-S18-alanine acetyltransferase.
  
    0.632
BDP_1214
Glycoprotease protein family.
       0.626
BDP_0806
ATPase-like magnesium chelatase subunit ChlI.
 
  
 0.591
BDP_0807
Endonuclease; Belongs to the UPF0102 family.
  
    0.503
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.