BDP_1228 protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDP_1228

Permease protein of ABC transporter system. (313 aa)

Predicted Functional Partners:

BDP_1229

0.664

glmU

0.660

rsfS

0.657

BDP_1227

0.569

gyrB

0.514

gyrB2

0.514

lysM

0.455

BDP_1563

0.455

BDP_0826

0.421

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_0826	BDP_1227	BDP_0826	BDP_1227	Transporter, drug/metabolite exporter family.	Conserved hypothetical protein.	0.403
BDP_0826	BDP_1228	BDP_0826	BDP_1228	Transporter, drug/metabolite exporter family.	Permease protein of ABC transporter system.	0.421
BDP_1227	BDP_0826	BDP_1227	BDP_0826	Conserved hypothetical protein.	Transporter, drug/metabolite exporter family.	0.403
BDP_1227	BDP_1228	BDP_1227	BDP_1228	Conserved hypothetical protein.	Permease protein of ABC transporter system.	0.569
BDP_1228	BDP_0826	BDP_1228	BDP_0826	Permease protein of ABC transporter system.	Transporter, drug/metabolite exporter family.	0.421
BDP_1228	BDP_1227	BDP_1228	BDP_1227	Permease protein of ABC transporter system.	Conserved hypothetical protein.	0.569
BDP_1228	BDP_1229	BDP_1228	BDP_1229	Permease protein of ABC transporter system.	Phosphoglycerate mutase family protein.	0.664
BDP_1228	BDP_1563	BDP_1228	BDP_1563	Permease protein of ABC transporter system.	Hypothetical protein.	0.455
BDP_1228	glmU	BDP_1228	BDP_1231	Permease protein of ABC transporter system.	glmU UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.	0.660
BDP_1228	gyrB	BDP_1228	BDP_0005	Permease protein of ABC transporter system.	DNA gyrase.	0.514
BDP_1228	gyrB2	BDP_1228	BDP_1410	Permease protein of ABC transporter system.	gyrB2 DNA gyrase subunit B.	0.514
BDP_1228	lysM	BDP_1228	BDP_1555	Permease protein of ABC transporter system.	LysM domain protein.	0.455
BDP_1228	rsfS	BDP_1228	BDP_1230	Permease protein of ABC transporter system.	Iojap protein family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.657
BDP_1229	BDP_1228	BDP_1229	BDP_1228	Phosphoglycerate mutase family protein.	Permease protein of ABC transporter system.	0.664
BDP_1229	glmU	BDP_1229	BDP_1231	Phosphoglycerate mutase family protein.	glmU UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.	0.822
BDP_1229	rsfS	BDP_1229	BDP_1230	Phosphoglycerate mutase family protein.	Iojap protein family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.828
BDP_1563	BDP_1228	BDP_1563	BDP_1228	Hypothetical protein.	Permease protein of ABC transporter system.	0.455
glmU	BDP_1228	BDP_1231	BDP_1228	glmU UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.	Permease protein of ABC transporter system.	0.660
glmU	BDP_1229	BDP_1231	BDP_1229	glmU UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.	Phosphoglycerate mutase family protein.	0.822
glmU	rsfS	BDP_1231	BDP_1230	glmU UDP-N-acetylglucosamine pyrophosphorylase; Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP-GlcNAc). The C- terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N- acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5-monophosphate (from uridine 5- triphosphate), a reaction catalyzed by the N-terminal domain.	Iojap protein family; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.	0.860