Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
csn1CRISPR-associated endonuclease Csn1. (1138 aa)    
Predicted Functional Partners:
cas1
CRISPR-associated protein Cas1.
 
   
 0.944
cas2
CRISPR-associated Cas2.
 
   
 0.923
BDP_0587
Gp26.
  
     0.766
BDP_1739
5 nucleotidase deoxy cytosolic type C.
  
     0.715
BDP_0063
Conserved hypothetical protein.
  
   
 0.654
BDP_0920
Conserved hypothetical protein.
  
     0.618
BDP_0260
MFS-family transporter.
  
   
 0.497
BDP_2165
Binding-protein-dependent transport systems inner membrane component.
  
     0.466
BDP_2085
Glutamine amidotransferase, class-II.
  
     0.440
BDP_1809
Conserved hypothetical protein with YkuD domain.
  
     0.427
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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