STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1268Sugar-binding protein of ABC transporter system. (416 aa)    
Predicted Functional Partners:
BDP_1269
Sugar-binding protein of ABC transporter system.
 
   0.903
BDP_1270
Glucose transport system permease protein (ABC type).
 
   0.865
BDP_0952
Extracellular solute-binding protein.
  
  
  0.810
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
  
 0.796
BDP_1271
Conserved hypothetical protein (possible glycogen debranching enzyme).
 
     0.767
cebR
cebR Cellobiose transport system transcriptional regulator - LacI family regulator.
 
     0.715
malC
MalC Maltodextrin transport system permease protein.
  
  0.684
BDP_2185
Solute-binding protein of ABC transporter system (lactose).
  
  
 
0.587
BDP_1338
ATP-binding protein of ABC transporter system.
   
 
  0.553
BDP_0813
ABC-type cobalt transport system.
   
 
  0.551
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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