STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1269Sugar-binding protein of ABC transporter system. (320 aa)    
Predicted Functional Partners:
BDP_1270
Glucose transport system permease protein (ABC type).
 
   0.924
BDP_1268
Sugar-binding protein of ABC transporter system.
 
   0.903
BDP_0950
Beta-glucosidase.
 
   0.847
BDP_2183
Sugar ABC transporter, permease protein.
 
   0.822
BDP_1704
Sugar-binding protein of ABC transporter system, permease.
 
   0.780
BDP_0139
ABC-type sugar transport system, permease component.
 
   0.747
BDP_1271
Conserved hypothetical protein (possible glycogen debranching enzyme).
 
     0.710
BDP_2238
ATP-binding protein of ABC transporter system for sugars; Belongs to the ABC transporter superfamily.
 
 
 0.704
BDP_2172
Permease protein of ABC transporter system for sugars.
 
   0.701
BDP_0952
Extracellular solute-binding protein.
 
   0.692
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.