BDP_1278 protein (Bifidobacterium dentium) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BDP_1278

Trk-type K+ transport systems, membrane protein. (444 aa)

Predicted Functional Partners:

BDP_1279

0.983

BDP_1346

0.776

recN

0.689

nadK

0.687

BDP_1275

0.617

pheT

0.414

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_1275	BDP_1278	BDP_1275	BDP_1278	Haloacid dehalogenase-like hydrolase (HAD superfamily).	Trk-type K+ transport systems, membrane protein.	0.617
BDP_1275	BDP_1279	BDP_1275	BDP_1279	Haloacid dehalogenase-like hydrolase (HAD superfamily).	K+ transport systems, NAD-binding component.	0.577
BDP_1275	nadK	BDP_1275	BDP_1277	Haloacid dehalogenase-like hydrolase (HAD superfamily).	NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.732
BDP_1275	recN	BDP_1275	BDP_1276	Haloacid dehalogenase-like hydrolase (HAD superfamily).	DNA repair protein recN; May be involved in recombinational repair of damaged DNA.	0.732
BDP_1278	BDP_1275	BDP_1278	BDP_1275	Trk-type K+ transport systems, membrane protein.	Haloacid dehalogenase-like hydrolase (HAD superfamily).	0.617
BDP_1278	BDP_1279	BDP_1278	BDP_1279	Trk-type K+ transport systems, membrane protein.	K+ transport systems, NAD-binding component.	0.983
BDP_1278	BDP_1346	BDP_1278	BDP_1346	Trk-type K+ transport systems, membrane protein.	Potassium channel protein.	0.776
BDP_1278	nadK	BDP_1278	BDP_1277	Trk-type K+ transport systems, membrane protein.	NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.687
BDP_1278	pheT	BDP_1278	BDP_1298	Trk-type K+ transport systems, membrane protein.	pheT Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	0.414
BDP_1278	recN	BDP_1278	BDP_1276	Trk-type K+ transport systems, membrane protein.	DNA repair protein recN; May be involved in recombinational repair of damaged DNA.	0.689
BDP_1279	BDP_1275	BDP_1279	BDP_1275	K+ transport systems, NAD-binding component.	Haloacid dehalogenase-like hydrolase (HAD superfamily).	0.577
BDP_1279	BDP_1278	BDP_1279	BDP_1278	K+ transport systems, NAD-binding component.	Trk-type K+ transport systems, membrane protein.	0.983
BDP_1279	nadK	BDP_1279	BDP_1277	K+ transport systems, NAD-binding component.	NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	0.607
BDP_1279	recN	BDP_1279	BDP_1276	K+ transport systems, NAD-binding component.	DNA repair protein recN; May be involved in recombinational repair of damaged DNA.	0.607
BDP_1346	BDP_1278	BDP_1346	BDP_1278	Potassium channel protein.	Trk-type K+ transport systems, membrane protein.	0.776
nadK	BDP_1275	BDP_1277	BDP_1275	NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	Haloacid dehalogenase-like hydrolase (HAD superfamily).	0.732
nadK	BDP_1278	BDP_1277	BDP_1278	NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	Trk-type K+ transport systems, membrane protein.	0.687
nadK	BDP_1279	BDP_1277	BDP_1279	NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	K+ transport systems, NAD-binding component.	0.607
nadK	recN	BDP_1277	BDP_1276	NAD(+) kinase; Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP.	DNA repair protein recN; May be involved in recombinational repair of damaged DNA.	0.907
pheT	BDP_1278	BDP_1298	BDP_1278	pheT Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.	Trk-type K+ transport systems, membrane protein.	0.414