STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1302ATP-binding protein of ABC transporter system. (227 aa)    
Predicted Functional Partners:
BDP_1301
Permease protein of ABC transporter system.
 
 
 0.918
BDP_2016
ATP-binding protein of ABC transporter system.
  
     0.727
vexP1
ATP-binding protein of ABC transporter system VexP1.
 
   0.676
BDP_0817
Permease protein of ABC transporter system.
 
 
 0.653
vexP3
ATP-binding protein of ABC transporter system VexP3.
 
   0.648
pheS
pheS Phenylalanyl-tRNA synthetase alpha chain; Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily.
 
 
   0.640
BDP_2082
Permease protein of ABC transporter system.
 
   0.623
BDP_0711
Permease protein of ABC transporter system.
 
 
 0.605
BDP_1300
rRNA methylase; Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family.
       0.550
BDP_1496
Permease protein of ABC transporter system.
 
   0.506
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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