Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1318Transcriptional regulator, AraC family. (298 aa)    
Predicted Functional Partners:
BDP_0835
Transcriptional regulator, AraC family.
 
 
 0.799
BDP_0498
Hypothetical protein.
  
  
 0.643
BDP_0374
Conserved hypothetical protein.
 
 
 0.636
BDP_1078
Glutamate synthase [NADPH] large subunit.
     
 0.581
hrdB
RNA polymerase principal sigma factor hrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth.
   
 
 0.541
BDP_2077
RNA polymerase sigma factor.
   
 
 0.541
BDP_1058
Conserved hypothetical protein.
  
 
 0.513
BDP_2219
SIR2 family protein.
  
    0.509
adh2
Adh2 Aldehyde-alcohol dehydrogenase 2; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.506
BDP_0858
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
 
  
 0.497
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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