STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1326Permease protein of ABC transporter system for cobalt. (273 aa)    
Predicted Functional Partners:
BDP_1327
ATP-binding protein of ABC transporter system.
 
 0.998
BDP_1328
Permease protein of ABC transporter system.
 
  
 0.952
BDP_0359
Putative BioY-family protein.
  
 0.936
cbiQ
CbiQ Cobalt transport protein.
  
  
  0.915
BDP_0813
ABC-type cobalt transport system.
 
 0.871
BDP_1334
ATP-binding protein of ABC transporter system.
  
 
 0.851
BDP_1338
ATP-binding protein of ABC transporter system.
 
 
 0.711
BDP_0812
Conserved hypothetical protein.
  
 
 0.650
BDP_0666
ATP-binding protein of ABC transporter system for peptides.
  
 
 0.594
oppD2
oppD2 Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
  
 
 0.594
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.