Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1327ATP-binding protein of ABC transporter system. (497 aa)    
Predicted Functional Partners:
BDP_1326
Permease protein of ABC transporter system for cobalt.
 
 0.997
BDP_1328
Permease protein of ABC transporter system.
 
  
 0.934
BDP_1338
ATP-binding protein of ABC transporter system.
 
0.803
BDP_1334
ATP-binding protein of ABC transporter system.
  
0.691
cbiQ
CbiQ Cobalt transport protein.
 
 
 0.656
BDP_0813
ABC-type cobalt transport system.
  
  
 
0.635
BDP_1532
Solute binding protein of ABC transporter system for peptides.
 
 0.617
BDP_1975
Solute binding protein of ABC transporter system for peptides.
 
 0.602
BDP_0663
Solute binding protein of ABC transporter systemy for peptides.
 
 0.594
BDP_1325
Lysine decarboxylase; Belongs to the LOG family.
  
    0.572
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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