STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1331Narrowly conserved hypothetical protein. (1102 aa)    
Predicted Functional Partners:
BDP_1332
Narrowly conserved hypothetical membrane spanning protein.
 
  
 0.932
ligA
NAD-dependent DNA ligase; DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double- stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA; Belongs to the NAD-dependent DNA ligase family. LigA subfamily.
 
     0.855
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
 
 
 
 0.806
BDP_0234
Phosphohydrolase, calcineurin-like phosphoesterase.
  
 
   0.784
BDP_0886
Conserved hypothetical protein.
 
    0.779
BDP_1589
Chromosome segregation ATPase.
 
     0.779
BDP_0266
Conserved hypothetical protein.
  
 
   0.777
BDP_0523
Surface antigen.
 
   
 0.775
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.774
BDP_1208
Hypothetical secreted protein.
  
     0.774
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.