Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1332Narrowly conserved hypothetical membrane spanning protein. (734 aa)    
Predicted Functional Partners:
BDP_1331
Narrowly conserved hypothetical protein.
 
    0.922
BDP_0356
Conserved hypothetical membrane spanning protein.
  
     0.773
BDP_2268
Conserved hypothetical secreted protein.
  
     0.772
BDP_1208
Hypothetical secreted protein.
  
     0.771
BDP_1589
Chromosome segregation ATPase.
  
     0.771
BDP_1768
ATP-dependent DNA helicase, UvrD/REP family.
  
     0.762
BDP_0886
Conserved hypothetical protein.
 
   
 0.758
BDP_1170
Conserved hypothetical protein.
  
     0.758
BDP_0233
Conserved hypothetical protein.
  
     0.743
BDP_0169
Putative lipoprotein.
  
     0.741
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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