Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
BDP_1338ATP-binding protein of ABC transporter system. (767 aa)    
Predicted Functional Partners:
BDP_1334
ATP-binding protein of ABC transporter system.
 
 0.988
BDP_1337
Conserved hypothetical membrane spanning protein; Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins; Belongs to the prokaryotic riboflavin transporter (P-RFT) (TC 2.A.87) family.
     
 0.835
BDP_0813
ABC-type cobalt transport system.
 
0.807
BDP_1327
ATP-binding protein of ABC transporter system.
 
0.803
BDP_1328
Permease protein of ABC transporter system.
 
  
 0.759
BDP_0359
Putative BioY-family protein.
  
 
 0.736
cbiQ
CbiQ Cobalt transport protein.
 
 
 0.708
BDP_1339
Prolidase (X-Pro dipeptidase).
       0.668
BDP_1326
Permease protein of ABC transporter system for cobalt.
 
 
 0.636
BDP_0664
Permease protein of ABC transporter system for peptides.
 
 
 0.627
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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