Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
serA2-2serA2 D-3-phosphoglycerate dehydrogenase. (330 aa)    
Predicted Functional Partners:
BDP_0522
serC Phosphoserine aminotransferase; Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine.
  
 0.823
gap
Gap Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
    
 0.566
BDP_1349
Conserved hypothetical protein with DUF488 domain.
       0.478
BDP_1347
Na+ driven multidrug efflux pump.
       0.461
fabG-4
fabG 3-oxoacyl-[acyl-carrier protein] reductase.
 
 
 0.436
BDP_0831
Phosphoribulokinase (uridine kinase family protein).
   
  0.425
BDP_1078
Glutamate synthase [NADPH] large subunit.
  
 
 0.417
sdr
Short chain dehydrogenase.
 
 
 0.409
BDP_1346
Potassium channel protein.
       0.405
cysK
cysK cysteine synthase.
  
 
 0.404
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
Server load: low (32%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.