STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1402Nucleotide pyrophosphatase. (409 aa)    
Predicted Functional Partners:
gyrA2
gyrA2 DNA gyrase subunit A.
 
     0.734
BDP_1306
Conserved hypothetical membrane spanning protein.
  
     0.703
BDP_1304
Conserved hypothetical membrane spanning protein.
  
     0.695
mviN
Integral membrane protein MviN.
 
     0.653
BDP_0251
DNA polymerase III subunit delta prime subunit.
  
     0.619
BDP_0203
Conserved hypothetical protein.
  
     0.523
BDP_0783
ATPase involved in DNA repair.
  
    0.516
BDP_0007
Hypothetical membrane spanning protein.
  
     0.494
BDP_0398
DNA and RNA helicase related protein.
  
     0.492
BDP_0886
Conserved hypothetical protein.
  
    0.440
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.