Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BDP_0716 | hrdB | BDP_0716 | BDP_1411 | Ferric uptake regulation protein; Belongs to the Fur family. | RNA polymerase principal sigma factor hrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.764 |
| BDP_0716 | polA | BDP_0716 | BDP_0457 | Ferric uptake regulation protein; Belongs to the Fur family. | polA DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| BDP_0716 | rpoB | BDP_0716 | BDP_1782 | Ferric uptake regulation protein; Belongs to the Fur family. | DNA-directed RNA polymerase subunit beta RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.712 |
| BDP_0716 | rpoC | BDP_0716 | BDP_1781 | Ferric uptake regulation protein; Belongs to the Fur family. | DNA-directed RNA polymerase subunit beta' RpoC; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.707 |
| BDP_0716 | rpoZ | BDP_0716 | BDP_0745 | Ferric uptake regulation protein; Belongs to the Fur family. | rpoZ DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.718 |
| BDP_0894 | hrdB | BDP_0894 | BDP_1411 | CarD family transcriptional regulator. | RNA polymerase principal sigma factor hrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.999 |
| BDP_0894 | polA | BDP_0894 | BDP_0457 | CarD family transcriptional regulator. | polA DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| BDP_0894 | rbpA | BDP_0894 | BDP_1159 | CarD family transcriptional regulator. | Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters. | 0.999 |
| BDP_0894 | rpoB | BDP_0894 | BDP_1782 | CarD family transcriptional regulator. | DNA-directed RNA polymerase subunit beta RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| BDP_0894 | rpoC | BDP_0894 | BDP_1781 | CarD family transcriptional regulator. | DNA-directed RNA polymerase subunit beta' RpoC; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| BDP_0894 | rpoZ | BDP_0894 | BDP_0745 | CarD family transcriptional regulator. | rpoZ DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
| BDP_1663 | hrdB | BDP_1663 | BDP_1411 | Transcriptional regulator, MerR family. | RNA polymerase principal sigma factor hrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.999 |
| BDP_1663 | polA | BDP_1663 | BDP_0457 | Transcriptional regulator, MerR family. | polA DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| BDP_1663 | rpoB | BDP_1663 | BDP_1782 | Transcriptional regulator, MerR family. | DNA-directed RNA polymerase subunit beta RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| BDP_1663 | rpoC | BDP_1663 | BDP_1781 | Transcriptional regulator, MerR family. | DNA-directed RNA polymerase subunit beta' RpoC; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
| BDP_1663 | rpoZ | BDP_1663 | BDP_0745 | Transcriptional regulator, MerR family. | rpoZ DNA-directed RNA polymerase omega chain; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.999 |
| gyrB2 | hrdB | BDP_1410 | BDP_1411 | gyrB2 DNA gyrase subunit B. | RNA polymerase principal sigma factor hrdB; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.801 |
| gyrB2 | polA | BDP_1410 | BDP_0457 | gyrB2 DNA gyrase subunit B. | polA DNA-directed RNA polymerase alpha chain; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.417 |
| gyrB2 | rpoB | BDP_1410 | BDP_1782 | gyrB2 DNA gyrase subunit B. | DNA-directed RNA polymerase subunit beta RpoB; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.701 |
| gyrB2 | rpoC | BDP_1410 | BDP_1781 | gyrB2 DNA gyrase subunit B. | DNA-directed RNA polymerase subunit beta' RpoC; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.451 |
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