BDP_1419 protein (Bifidobacterium dentium) - STRING interaction network

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[Homology]

Score

BDP_1419

Ribosome-associated factor Y. (195 aa)

Predicted Functional Partners:

rpsO

0.936

rpsQ

0.934

rpsB

0.934

rpsC

0.932

rpsR

0.932

rpsI

0.898

rpsM

0.898

rpmA

0.894

rpmC

0.894

rplR

0.893

Your Current Organism:

Bifidobacterium dentium

NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BDP_1419	rplR	BDP_1419	BDP_0447	Ribosome-associated factor Y.	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	0.893
BDP_1419	rpmA	BDP_1419	BDP_0346	Ribosome-associated factor Y.	rpmA LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.894
BDP_1419	rpmC	BDP_1419	BDP_0439	Ribosome-associated factor Y.	rpmC 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.894
BDP_1419	rpsB	BDP_1419	BDP_1202	Ribosome-associated factor Y.	rpsB SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.934
BDP_1419	rpsC	BDP_1419	BDP_0437	Ribosome-associated factor Y.	rpsC 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.932
BDP_1419	rpsI	BDP_1419	BDP_0420	Ribosome-associated factor Y.	rpsI 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.898
BDP_1419	rpsM	BDP_1419	BDP_0455	Ribosome-associated factor Y.	rpsM SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.898
BDP_1419	rpsO	BDP_1419	BDP_0366	Ribosome-associated factor Y.	rpsO SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.936
BDP_1419	rpsQ	BDP_1419	BDP_0440	Ribosome-associated factor Y.	rpsQ 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.934
BDP_1419	rpsR	BDP_1419	BDP_2020	Ribosome-associated factor Y.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.932
rplR	BDP_1419	BDP_0447	BDP_1419	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	Ribosome-associated factor Y.	0.893
rplR	rpmA	BDP_0447	BDP_0346	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	rpmA LSU ribosomal protein L27P; Belongs to the bacterial ribosomal protein bL27 family.	0.984
rplR	rpmC	BDP_0447	BDP_0439	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	rpmC 50S ribosomal protein L29; Belongs to the universal ribosomal protein uL29 family.	0.999
rplR	rpsB	BDP_0447	BDP_1202	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	rpsB SSU ribosomal protein S2P; Belongs to the universal ribosomal protein uS2 family.	0.991
rplR	rpsC	BDP_0447	BDP_0437	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	rpsC 30S ribosomal protein S3; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family.	0.997
rplR	rpsI	BDP_0447	BDP_0420	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	rpsI 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.	0.992
rplR	rpsM	BDP_0447	BDP_0455	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	rpsM SSU ribosomal protein S13P; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family.	0.997
rplR	rpsO	BDP_0447	BDP_0366	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	rpsO SSU ribosomal protein S15P; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome.	0.984
rplR	rpsQ	BDP_0447	BDP_0440	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	rpsQ 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.	0.998
rplR	rpsR	BDP_0447	BDP_2020	rplR 50S ribosomal protein L18; This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance.	30S ribosomal protein S18; Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit; Belongs to the bacterial ribosomal protein bS18 family.	0.993