Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1423Transcriptional regulator. (166 aa)    
Predicted Functional Partners:
cinA
Competence-damage protein cinA; Belongs to the CinA family.
     
 0.724
BDP_1156
Transcriptional regulator, MerR family.
  
  
 0.680
pgsA2-2
pgsA2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.676
BDP_1400
Conserved hypothetical protein.
  
     0.672
BDP_1422
Conserved hypothetical protein.
       0.666
BDP_0028
Conserved hypothetical protein.
  
     0.664
BDP_1623
Conserved hypothetical protein.
  
     0.664
BDP_1216
DNA polymerase III, delta subunit.
  
     0.657
ftsK-2
Cell division protein ftsK.
  
  
 0.647
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
    0.622
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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