Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ftsK-2Cell division protein ftsK. (928 aa)    
Predicted Functional Partners:
parB
Chromosome partitioning protein ParB; Belongs to the ParB family.
  
  
 0.856
ftsI
ftsI Peptidoglycan synthetase FtsI, penicillin-binding protein.
 
 
 0.766
pgsA2-2
pgsA2 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
  
  
 0.765
fstW
fstW Cell division protein ftsW; Belongs to the SEDS family.
 
  
 0.765
xerC
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
   
 0.731
cinA
Competence-damage protein cinA; Belongs to the CinA family.
     
 0.728
xerD
Integrase/recombinase (XerD/RipX family); Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
 
   
 0.693
ftsQ
ftsQ Cell division protein ftsQ.
   
 
 0.673
BDP_1423
Transcriptional regulator.
  
  
 0.647
BDP_0601
Phage integrase; Belongs to the 'phage' integrase family.
 
   
 0.604
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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