STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1427Mannan endo-1,4-beta-mannosidase precursor; Belongs to the glycosyl hydrolase 26 family. (1012 aa)    
Predicted Functional Partners:
BDP_2126
Mannosidase; Belongs to the glycosyl hydrolase 26 family.
  
  
 
0.924
BDP_1534
Fructokinase.
     
 0.807
BDP_0123
Acetyl esterase.
 
   
 0.650
BDP_2147
Endoglucanase family 5; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.558
BDP_0236
Beta-xylosidase or endo-arabinase; Belongs to the glycosyl hydrolase 43 family.
  
   
 0.516
BDP_0125
ABC transport system, sugar-binding component.
  
     0.515
galA
GalA Glycosyl hydrolases family 53, Endogalactanase.
  
   
 0.484
BDP_2148
Cellulase.
 
  
 0.469
BDP_1680
Glycosyl hydrolases family 30, Glucosylceramidase; Belongs to the glycosyl hydrolase 30 family.
  
  
 0.464
BDP_2127
Cellobiose phosphorylase.
 
     0.447
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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