STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1439ABC-type multidrug transport system permease. (421 aa)    
Predicted Functional Partners:
BDP_1438
ATP-binding protein of ABC transporter system.
 
  
 0.978
BDP_1440
ABC-2 type transporter.
 
     0.938
BDP_1436
Histidine kinase sensor of two-component system.
 
  
 0.897
BDP_1435
Response regulatorof two-component system.
 
  
 0.804
BDP_0181
Hypothetical membrane-spanning protein.
  
     0.688
BDP_0195
Conserved hypothetical protein.
  
     0.667
BDP_0293
Transcriptional regulator, TetR family.
 
     0.630
BDP_0081
Nitroreductase family protein.
  
  
 0.490
BDP_1841
Nitroreductase.
  
  
 0.490
BDP_2216
Chromate reductase/NADPH-dependent FMN reductase/Oxygen-insensitive NADPH nitroreductase; Belongs to the flavin oxidoreductase frp family.
  
  
 0.490
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.