Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1464Phage major head. (294 aa)    
Predicted Functional Partners:
BDP_1461
Phage protein.
 
     0.862
BDP_1469
Phage major tail protein.
 
     0.860
BDP_1460
Phage terminase.
 
     0.848
BDP_1465
Phage protein.
       0.773
BDP_1463
Conserved hypothetical protein.
       0.756
BDP_1466
Phage protein.
       0.750
BDP_1462
Phage protein.
       0.541
BDP_1467
Phage protein.
       0.537
BDP_1468
Phage protein.
       0.438
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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