STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1469Phage major tail protein. (237 aa)    
Predicted Functional Partners:
BDP_1464
Phage major head.
 
     0.860
BDP_1460
Phage terminase.
 
     0.825
BDP_1461
Phage protein.
 
     0.821
BDP_1468
Phage protein.
       0.774
BDP_1467
Phage protein.
       0.605
BDP_1465
Phage protein.
       0.474
BDP_1466
Phage protein.
       0.471
BDP_1470
Hypothetical protein.
       0.450
BDP_1463
Conserved hypothetical protein.
       0.443
pepO
pepO Zinc metalloprotease.
 
    0.436
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.