STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ctpEctpE Cation-transporting ATPase. (818 aa)    
Predicted Functional Partners:
BDP_1483
ABC-type sugar transport system, periplasmic component.
  
    0.715
BDP_1484
tRNA (Uracil-5-) -methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.701
BDP_1485
ABC-type Mn2+/Zn2+ transport systems, permease components.
       0.678
BDP_1486
Conserved hypothetical protein.
       0.633
xth
Xth Exodeoxyribonuclease III.
  
  
 0.459
pacL2
PacL2 Calcium-transporting ATPase.
 
 
0.454
acn
Acn Aconitate hydratase; Catalyzes the isomerization of citrate to isocitrate via cis- aconitate.
  
    0.431
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.