STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1483ABC-type sugar transport system, periplasmic component. (191 aa)    
Predicted Functional Partners:
BDP_1484
tRNA (Uracil-5-) -methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.856
BDP_1485
ABC-type Mn2+/Zn2+ transport systems, permease components.
       0.856
BDP_1486
Conserved hypothetical protein.
       0.817
ctpE
ctpE Cation-transporting ATPase.
  
    0.715
xth
Xth Exodeoxyribonuclease III.
       0.685
BDP_0175
Sugar mutarotase; Catalyzes the interconversion of beta-pyran and beta-furan forms of D-ribose.
  
  
 0.621
BDP_0173
ABC-type sugar transporter permease component; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.585
rbsC1-3
Ribose transport system permease protein RbsC; Belongs to the binding-protein-dependent transport system permease family.
  
 
 0.585
oppC1
oppC1 Oligopeptide transport system permease protein oppC.
  
    0.565
phoR
Phosphate regulon sensor protein phoR.
    
 
 0.564
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.