STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1485ABC-type Mn2+/Zn2+ transport systems, permease components. (242 aa)    
Predicted Functional Partners:
BDP_1486
Conserved hypothetical protein.
 
     0.837
BDP_1483
ABC-type sugar transport system, periplasmic component.
       0.822
BDP_1484
tRNA (Uracil-5-) -methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.822
BDP_2244
ATP-binding protein of ABC transporter system.
  
 
 0.786
BDP_1618
Pyridoxine biosynthesis enzyme.
  
     0.723
BDP_1937
Conserved hypothetical protein.
  
     0.693
BDP_1610
Solute binding protein of ABC transporter system.
  
 
 0.677
BDP_2246
Twin-arginine translocation pathway signal.
  
 
 0.677
xth
Xth Exodeoxyribonuclease III.
  
  
 0.662
BDP_0771
Conserved hypothetical protein.
  
     0.647
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.