STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1486Conserved hypothetical protein. (273 aa)    
Predicted Functional Partners:
BDP_1485
ABC-type Mn2+/Zn2+ transport systems, permease components.
 
     0.863
BDP_1483
ABC-type sugar transport system, periplasmic component.
       0.817
BDP_1484
tRNA (Uracil-5-) -methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.817
BDP_1400
Conserved hypothetical protein.
 
     0.788
BDP_1306
Conserved hypothetical membrane spanning protein.
  
     0.758
BDP_1216
DNA polymerase III, delta subunit.
  
     0.749
rbpA
Conserved hypothetical protein; Binds to RNA polymerase (RNAP), stimulating transcription from principal, but not alternative sigma factor promoters.
  
     0.733
xth
Xth Exodeoxyribonuclease III.
       0.709
BDP_1590
Hemolysin-like protein.
  
     0.699
BDP_0631
Single-strand DNA binding protein.
 
     0.687
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.