STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppA2oppA2 Oligopeptide-binding protein oppA. (547 aa)    
Predicted Functional Partners:
oppB2
oppB2 Oligopeptide transport system permease protein oppB.
 
 0.994
oppC1
oppC1 Oligopeptide transport system permease protein oppC.
 
 
 0.991
oppD2
oppD2 Oligopeptide transport ATP-binding protein oppD; Belongs to the ABC transporter superfamily.
 
 0.987
oppA2-2
oppA2 Oligopeptide-binding protein oppA.
 
  
 
0.941
BDP_0797
Solute binding protein of ABC transporter system for peptides.
  
  
 
0.907
oppB2-2
oppB2 Oligopeptide transport system permease protein oppB.
 
 
 0.845
BDP_0664
Permease protein of ABC transporter system for peptides.
 
 
 0.837
BDP_1975
Solute binding protein of ABC transporter system for peptides.
 
 
 0.728
BDP_0665
Permease protein of ABC transporter system for peptides.
 
  
 0.679
BDP_1338
ATP-binding protein of ABC transporter system.
  
 0.602
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.