Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| BDP_0890 | apt | BDP_0890 | BDP_1173 | Conserved hypothetical protein. | Adenine phosphoribosyltransferase (APRT); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | 0.675 |
| BDP_0890 | tyrA2 | BDP_0890 | BDP_1498 | Conserved hypothetical protein. | tyrA2 Prephenate dehydrogenase. | 0.696 |
| BDP_0890 | xerC | BDP_0890 | BDP_1494 | Conserved hypothetical protein. | Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.692 |
| BDP_1022 | xerC | BDP_1022 | BDP_1494 | Holliday junction resolvase; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family. | Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.595 |
| BDP_1495 | BDP_1496 | BDP_1495 | BDP_1496 | ATP-binding protein of ABC transporter system. | Permease protein of ABC transporter system. | 0.982 |
| BDP_1495 | BDP_1497 | BDP_1495 | BDP_1497 | ATP-binding protein of ABC transporter system. | Conserved hypothetical protein. | 0.777 |
| BDP_1495 | xerC | BDP_1495 | BDP_1494 | ATP-binding protein of ABC transporter system. | Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.717 |
| BDP_1496 | BDP_1495 | BDP_1496 | BDP_1495 | Permease protein of ABC transporter system. | ATP-binding protein of ABC transporter system. | 0.982 |
| BDP_1496 | BDP_1497 | BDP_1496 | BDP_1497 | Permease protein of ABC transporter system. | Conserved hypothetical protein. | 0.777 |
| BDP_1496 | oppA2 | BDP_1496 | BDP_1492 | Permease protein of ABC transporter system. | oppA2 Oligopeptide-binding protein oppA. | 0.421 |
| BDP_1496 | xerC | BDP_1496 | BDP_1494 | Permease protein of ABC transporter system. | Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.721 |
| BDP_1497 | BDP_1495 | BDP_1497 | BDP_1495 | Conserved hypothetical protein. | ATP-binding protein of ABC transporter system. | 0.777 |
| BDP_1497 | BDP_1496 | BDP_1497 | BDP_1496 | Conserved hypothetical protein. | Permease protein of ABC transporter system. | 0.777 |
| BDP_1497 | oppA2 | BDP_1497 | BDP_1492 | Conserved hypothetical protein. | oppA2 Oligopeptide-binding protein oppA. | 0.417 |
| BDP_1497 | xerC | BDP_1497 | BDP_1494 | Conserved hypothetical protein. | Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.648 |
| apt | BDP_0890 | BDP_1173 | BDP_0890 | Adenine phosphoribosyltransferase (APRT); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Conserved hypothetical protein. | 0.675 |
| apt | tyrA2 | BDP_1173 | BDP_1498 | Adenine phosphoribosyltransferase (APRT); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | tyrA2 Prephenate dehydrogenase. | 0.686 |
| apt | xerC | BDP_1173 | BDP_1494 | Adenine phosphoribosyltransferase (APRT); Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis. | Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.685 |
| ftsK-2 | xerC | BDP_1426 | BDP_1494 | Cell division protein ftsK. | Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. | 0.704 |
| oppA2 | BDP_1496 | BDP_1492 | BDP_1496 | oppA2 Oligopeptide-binding protein oppA. | Permease protein of ABC transporter system. | 0.421 |
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