STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1495ATP-binding protein of ABC transporter system. (272 aa)    
Predicted Functional Partners:
BDP_1496
Permease protein of ABC transporter system.
 
 
 0.982
BDP_0817
Permease protein of ABC transporter system.
 
 
 0.906
BDP_0711
Permease protein of ABC transporter system.
 
 0.865
BDP_1497
Conserved hypothetical protein.
       0.777
xerC
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
       0.717
BDP_0167
ABC-type transporter, permease component.
 
 
 0.713
BDP_1060
ABC transporter, permease protein.
 
 
 0.671
BDP_0166
ABC-type transporter, permease component.
 
 
 0.615
BDP_2016
ATP-binding protein of ABC transporter system.
  
     0.603
BDP_0140
ABC-type transporter.
  
 
 0.577
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.