Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
BDP_1496Permease protein of ABC transporter system. (948 aa)    
Predicted Functional Partners:
BDP_1495
ATP-binding protein of ABC transporter system.
 
   0.969
BDP_0816
ATP-binding protein of ABC transporter system.
 
   0.830
BDP_1497
Conserved hypothetical protein.
       0.741
BDP_1180
Branched-chain amino acid transport ATP-binding protein.
  
    0.718
xerC
Integrase/recombinase; Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids.
  
    0.682
BDP_0709
ATP-binding protein of ABC transporter system.
 
   0.626
BDP_1179
Capsular polysaccharide biosynthesis protein.
  
    0.613
BDP_1059
ABC transporter ATP-binding protein.
 
   0.590
BDP_0168
ABC-type transporter, ATP-binding component.
 
   0.537
BDP_0339
ATP-binding protein of ABC transporter system.
 
   0.526
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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