STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
typA/bipAGTP-binding protein TypA/BipA. (630 aa)    
Predicted Functional Partners:
BDP_1500
Alcohol dehydrogenase, class IV.
       0.663
BDP_1078
Glutamate synthase [NADPH] large subunit.
  
  
 0.637
pheA
pheA Prephenate dehydratase.
     
 0.636
guaA
GMP synthase glutamine amidotransferase; Catalyzes the synthesis of GMP from XMP.
  
  
 0.630
BDP_0839
ATP-dependent RNA helicase.
 
  
 0.624
tyrA2
tyrA2 Prephenate dehydrogenase.
       0.612
infC
infC Bacterial Protein Translation Initiation Factor 3(IF-3); Belongs to the IF-3 family.
  
 
 0.531
rpsI
rpsI 30S ribosomal protein S9; Belongs to the universal ribosomal protein uS9 family.
  
    0.524
relA1
relA1 GTP pyrophosphokinase/Guanosine 3',5'-bis(Diphosphate)3'-pyrophosphohydrolase; In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance.
 
  
 0.516
rpmI
rpmI LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL35 family.
  
    0.511
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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