STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
xerDIntegrase/recombinase (XerD/RipX family); Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The XerC- XerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell division. It also contributes to the segregational stability of plasmids. (318 aa)    
Predicted Functional Partners:
parA1
parA1 Chromosome partitioning protein parA.
 
   
 0.782
rplT
rplT LSU ribosomal protein L20P; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.
     
 0.703
ftsK-2
Cell division protein ftsK.
 
   
 0.697
rpmI
rpmI LSU ribosomal protein; Belongs to the bacterial ribosomal protein bL35 family.
       0.643
infC
infC Bacterial Protein Translation Initiation Factor 3(IF-3); Belongs to the IF-3 family.
     
 0.632
BDP_1506
Phosphohydrolase (MutT/nudix family protein).
       0.606
tyrA2
tyrA2 Prephenate dehydrogenase.
  
    0.499
parB
Chromosome partitioning protein ParB; Belongs to the ParB family.
 
  
 0.445
BDP_0890
Conserved hypothetical protein.
   
    0.439
BDP_0906
NTP pyrophosphohydrolase.
  
  
 0.421
Your Current Organism:
Bifidobacterium dentium
NCBI taxonomy Id: 401473
Other names: B. dentium Bd1, Bifidobacterium dentium Bd1, Bifidobacterium dentium str. Bd1, Bifidobacterium dentium strain Bd1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.